2019-04-11

Outbreak Analysis Using 1928 - Klebsiella pneumoniae

cgMLST UPGMA-clustering of a Klebsiella pneumoniae outbreak using the 1928 platform

The tree is created using UPGMA and distances shown are computed based on pairwise allelic differences (hamming distance). Missing genes are not included in the count.

Klebsiella pneumoniae carbapenemase (KPC)-producing K. pneumoniae at a single institution: insights into endemicity from whole-genome sequencing

Mathers AJ et.al

pmid: 25561339

The 1928D Klebsiella pneumoniae cgMLST schema is created from 270 reference genomes giving the scheme 3450 core genes. All genes included in the schema are present in at least 95% of reference genomes.