2019-04-11

Outbreak Analysis Using 1928 - Neisseria gonorrhoeae

cgMLST UPGMA-clustering of a Neisseria gonorrhoeae outbreak using the 1928 platform

The tree is created using UPGMA and distances shown are computed based on pairwise allelic differences (hamming distance). Missing genes are not included in the count.

Gonorrhoea treatment failure caused by a Neisseria gonorrhoeae strain with combined ceftriaxone and high-level azithromycin resistance, England, February 2018.

Eyre DW et al.

pmid: 29991383

The 1928D Neisseria gonorrhoeae cgMLST schema is created from 29 reference genomes giving the scheme 1450 core genes. All genes included in the schema are present in at least 95% of reference genomes.