2019-04-11

Outbreak Analysis Using 1928 - Staphylococcus aureus

cgMLST UPGMA-clustering of a Staphylococcus aureus outbreak using the 1928 platform

The tree is created using UPGMA and distances shown are computed based on pairwise allelic differences (hamming distance). Missing genes are not included in the count.

Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study

Harris SR et al.

pmid: 23158674

The 1928D Staphylococcus aureus cgMLST schema is created from 123 reference genomes giving the scheme 1700 core genes. All genes included in the schema are present in at least 95% of reference genomes.